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Systematic Biology|September 22, 2018
A Simulation-Based Approach to Statistical AlignmentEli Levy Karin, Haim Ashkenazy, Jotun Hein, et al.
Systematic Biology|February 9, 2017
An Integrated Model of Phenotypic Trait Changes and Site-Specific Sequence EvolutionEli Levy Karin, Susann Wicke, Tal Pupko, et al.
Gene|November 5, 2003
Detecting excess radical replacements in phylogenetic treesTal Pupko, Roded Sharan, Masami Hasegawa, et al.
Frontiers in Microbiology|May 2, 2022
Phylogenetic Distribution and Evolution of Type VI Secretion System in the Genus <i>Xanthomonas</i>Prabha Liyanapathiranage, Naama Wagner, Oren Avram, et al.
Genome Biology and Evolution|April 3, 2018
The Prevalence and Evolutionary Conservation of Inverted Repeats in ProteobacteriaBar Lavi, Eli Levy Karin, Tal Pupko, et al.
Bioinformatics (Oxford, England)|September 30, 2010
GLOOME: gain loss mapping engineOfir Cohen, Haim Ashkenazy, Frida Belinky, et al.
Bioinformatics (Oxford, England)|August 15, 2002
A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene familiesTal Pupko, Itsik Pe'er, Masami Hasegawa, et al.
Molecular Biology and Evolution|March 9, 2010
An alignment confidence score capturing robustness to guide tree uncertaintyOsnat Penn, Eyal Privman, Giddy Landan, et al.
Molecular Biology and Evolution|June 22, 2011
Evolutionary models accounting for layers of selection in protein-coding genes and their impact on the inference of positive selectionNimrod D Rubinstein, Adi Doron-Faigenboim, Itay Mayrose, et al.
Nucleic Acids Research|May 13, 2023
GenomeFLTR: filtering reads made easyEdo Dotan, Michael Alburquerque, Elya Wygoda, et al.
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