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The Journal of Biological Chemistry|December 10, 2025
Ternary complexes in protein-DNA interactions: Kinetics and mechanismsAdina Hefetz, Elena Rogoulenko, Yaakov LevyNucleic Acids Research|May 9, 2024
Skipping events impose repeated binding attempts: profound kinetic implications of protein-DNA conformational changesElena Rogoulenko, Yaakov LevyBiochemistry|August 16, 2017
Protein Assembly and Building Blocks: Beyond the Limits of the LEGO Brick MetaphorYaakov LevyJournal of Molecular Biology|February 23, 2011
Sliding of p53 along DNA can be modulated by its oligomeric state and by cross-talks between its constituent domainsNetaly Khazanov, Yaakov LevyJournal of Molecular Biology|August 18, 2009
Nonnative electrostatic interactions can modulate protein folding: molecular dynamics with a grain of saltAriel Azia, Yaakov LevyNucleic Acids Research|October 18, 2014
Search by proteins for their DNA target site: 2. The effect of DNA conformation on the dynamics of multidomain proteinsArnab Bhattacherjee, Yaakov LevyProceedings of the National Academy of Sciences of the United States of America|April 10, 2015
Molecular determinants of the interactions between proteins and ssDNAGarima Mishra, Yaakov LevyPlos Computational Biology|May 27, 2020
Balance between asymmetry and abundance in multi-domain DNA-binding proteins may regulate the kinetics of their binding to DNAArumay Pal, Yaakov LevyJournal of Chemical Theory and Computation|July 22, 2024
Histidine in Proteins: pH-Dependent Interplay between π-π, Cation-π, and CH-π InteractionsRivka Calinsky, Yaakov LevyThe Journal of Physical Chemistry Letters|September 9, 2024
A pH-Dependent Coarse-Grained Model for Disordered Proteins: Histidine Interactions Modulate Conformational EnsemblesRivka Calinsky, Yaakov LevyPageof 13