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Journal of Molecular Biology
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July 19, 2024
Everything AlphaFold tells us about protein knots
Agata P Perlinska, Maciej Sikora, Joanna I Sulkowska
ACS Catalysis
|
September 9, 2020
Mg<sup>2+</sup>-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study
Agata P Perlinska, Marcin Kalek, Thomas Christian, et al.
Nucleic Acids Research
|
June 6, 2024
AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models
Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, et al.
Journal of Molecular Biology
|
May 21, 2025
Universe of Lasso Proteins: Exploring the Limit of Entanglement of Proteins Predicted by AlphaFold
Fernando Bruno da Silva, Agata P Perlinska, Jacek Płonka, et al.
Biophysical Journal
|
November 3, 2023
Conservation of knotted and slipknotted topology in transmembrane transporters
Vasilina Zayats, Maciej Sikora, Agata P Perlinska, et al.
Plos Computational Biology
|
May 27, 2020
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Agata P Perlinska, Adam Stasiulewicz, Ewa K Nawrocka, et al.
Plos Computational Biology
|
October 14, 2021
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor
Vasilina Zayats, Agata P Perlinska, Aleksandra I Jarmolinska, et al.
Journal of Molecular Biology
|
November 5, 2018
Proteins' Knotty Problems
Aleksandra I Jarmolinska, Agata P Perlinska, Robert Runkel, et al.
Protein Science : a Publication of the Protein Society
|
March 24, 2023
AlphaFold predicts novel human proteins with knots
Agata P Perlinska, Wanda H Niemyska, Bartosz A Gren, et al.
Plos Computational Biology
|
November 21, 2022
Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding
Agata P Perlinska, Adam Stasiulewicz, Mai Lan Nguyen, et al.
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Search research articles
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Showing results (1-10 of 15) with videos related to
Sort By:
Page
of 2
Journal of Molecular Biology
|
July 19, 2024
Everything AlphaFold tells us about protein knots
Agata P Perlinska, Maciej Sikora, Joanna I Sulkowska
ACS Catalysis
|
September 9, 2020
Mg<sup>2+</sup>-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study
Agata P Perlinska, Marcin Kalek, Thomas Christian, et al.
Nucleic Acids Research
|
June 6, 2024
AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models
Pawel Rubach, Maciej Sikora, Aleksandra I Jarmolinska, et al.
Journal of Molecular Biology
|
May 21, 2025
Universe of Lasso Proteins: Exploring the Limit of Entanglement of Proteins Predicted by AlphaFold
Fernando Bruno da Silva, Agata P Perlinska, Jacek Płonka, et al.
Biophysical Journal
|
November 3, 2023
Conservation of knotted and slipknotted topology in transmembrane transporters
Vasilina Zayats, Maciej Sikora, Agata P Perlinska, et al.
Plos Computational Biology
|
May 27, 2020
Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Agata P Perlinska, Adam Stasiulewicz, Ewa K Nawrocka, et al.
Plos Computational Biology
|
October 14, 2021
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor
Vasilina Zayats, Agata P Perlinska, Aleksandra I Jarmolinska, et al.
Journal of Molecular Biology
|
November 5, 2018
Proteins' Knotty Problems
Aleksandra I Jarmolinska, Agata P Perlinska, Robert Runkel, et al.
Protein Science : a Publication of the Protein Society
|
March 24, 2023
AlphaFold predicts novel human proteins with knots
Agata P Perlinska, Wanda H Niemyska, Bartosz A Gren, et al.
Plos Computational Biology
|
November 21, 2022
Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding
Agata P Perlinska, Adam Stasiulewicz, Mai Lan Nguyen, et al.
Page
of 2