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Nature Communications|November 17, 2023
Direct-acting antiviral resistance of Hepatitis C virus is promoted by epistasisHang Zhang, Ahmed Abdul Quadeer, Matthew R McKayPlos Computational Biology|September 8, 2018
Co-evolution networks of HIV/HCV are modular with direct association to structure and functionAhmed Abdul Quadeer, David Morales-Jimenez, Matthew R McKayCell Reports. Medicine|May 31, 2021
Landscape of epitopes targeted by T cells in 852 individuals recovered from COVID-19: Meta-analysis, immunoprevalence, and web platformAhmed Abdul Quadeer, Syed Faraz Ahmed, Matthew R McKayViruses|January 22, 2022
SARS-CoV-2 T Cell Responses Elicited by COVID-19 Vaccines or Infection Are Expected to Remain Robust against OmicronSyed Faraz Ahmed, Ahmed Abdul Quadeer, Matthew R McKayVirus Evolution|December 18, 2023
HCV E1 influences the fitness landscape of E2 and may enhance escape from E2-specific antibodiesHang Zhang, Rowena A Bull, Ahmed Abdul Quadeer, et al.Viruses|September 23, 2022
Vaccinia-Virus-Based Vaccines Are Expected to Elicit Highly Cross-Reactive Immunity to the 2022 Monkeypox VirusSyed Faraz Ahmed, Muhammad Saqib Sohail, Ahmed Abdul Quadeer, et al.Vaccines|April 23, 2022
Identification of Potential SARS-CoV-2 CD8+ T Cell Escape MutantsSyed Faraz Ahmed, Muhammad Saqib Sohail, Ahmed Abdul Quadeer, et al.Viruses|March 28, 2024
Cross-Reactivity Assessment of Vaccine-Derived SARS-CoV-2 T Cell Responses against BA.2.86 and JN.1Muhammad Saqib Sohail, Syed Faraz Ahmed, Ahmed Abdul Quadeer, et al.Advanced Drug Delivery Reviews|January 19, 2021
In silico T cell epitope identification for SARS-CoV-2: Progress and perspectivesMuhammad Saqib Sohail, Syed Faraz Ahmed, Ahmed Abdul Quadeer, et al.Nature Communications|January 8, 2025
Inferring effects of mutations on SARS-CoV-2 transmission from genomic surveillance dataBrian Lee, Ahmed Abdul Quadeer, Muhammad Saqib Sohail, et al.Pageof 2