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Journal of Biotechnology|August 23, 2011
Benefits of new tools in biotechnology to developing countries in south Asia: a perspective from UNESCOAhmed FahmiComputational and Structural Biotechnology Journal|January 16, 2026
PolyA-GLM: A comprehensive framework for De novo polyadenylation site prediction using genome language modelsSourav Saha, Naima Ahmed Fahmi, Jeongsik Yong, et al.Cellular Signalling|December 27, 2012
p42/p44-MAPK and PI3K are sufficient for IL-6 family cytokines/gp130 to signal to hypertrophy and survival in cardiomyocytes in the absence of JAK/STAT activationAhmed Fahmi, Nicola Smart, Anu Punn, et al.Plos Computational Biology|November 11, 2025
IPScan: Detecting novel intronic PolyAdenylation events with RNA-seq dataNaima Ahmed Fahmi, Sze Cheng, Jeovani Overstreet, et al.Experimental & Molecular Medicine|August 13, 2025
Computational methods for alternative polyadenylation and splicing in post-transcriptional gene regulationNaima Ahmed Fahmi, Sourav Saha, Qianqian Song, et al.Briefings in Bioinformatics|March 2, 2026
EpGAT: integrating epigenetics and 3D genome structure to predict alternative splicing and polyadenylationSudipto Baul, Naima Ahmed Fahmi, Guangyu Wang, et al.BMC Bioinformatics|September 28, 2022
APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq dataNaima Ahmed Fahmi, Khandakar Tanvir Ahmed, Jae-Woong Chang, et al.International Journal of Molecular Sciences|September 28, 2021
Computational Methods to Study Human Transcript Variants in COVID-19 Infected Lung Cancer CellsJiao Sun, Naima Ahmed Fahmi, Heba Nassereddeen, et al.International Journal of Molecular Sciences|October 27, 2022
mTOR Contributes to the Proteome Diversity through Transcriptome-Wide Alternative SplicingSze Cheng, Naima Ahmed Fahmi, Meeyeon Park, et al.International Journal of Molecular Sciences|April 30, 2021
AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq DataNaima Ahmed Fahmi, Heba Nassereddeen, Jaewoong Chang, et al.Pageof 2