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Current Biology : CB|May 14, 2010
Nucleosome positioning: an essential component of the enhancer regulatory code?Ahmet Ay, David N ArnostiCritical Reviews in Biochemistry and Molecular Biology|March 23, 2011
Mathematical modeling of gene expression: a guide for the perplexed biologistAhmet Ay, David N ArnostiTissue Engineering. Part A|August 9, 2008
Image processing and analysis for quantifying gene expression from early Drosophila embryosAhmet Ay, Walid D Fakhouri, Chichia Chiu, et al.BMC Systems Biology|October 26, 2010
Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effectsJacqueline M Dresch, Xiaozhou Liu, David N Arnosti, et al.Molecular Systems Biology|January 21, 2010
Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryoWalid D Fakhouri, Ahmet Ay, Rupinder Sayal, et al.Methods (San Diego, Calif.)|June 4, 2013
Global parameter estimation for thermodynamic models of transcriptional regulationYerzhan Suleimenov, Ahmet Ay, Md Abul Hassan Samee, et al.The Enzymes|September 25, 2023
Soft repression and chromatin modification by conserved transcriptional corepressorsDavid N ArnostiAnnual Review of Entomology|October 3, 2002
Analysis and function of transcriptional regulatory elements: insights from DrosophilaDavid N ArnostiCurrent Biology : CB|October 29, 2011
Transcriptional repressors: shutting off gene expression at the source affects developmental dynamicsDavid N ArnostiPageof 13