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Biorxiv : the Preprint Server for Biology|December 3, 2025
PCLIPtools: A Robust Framework for Identifying RNA-Protein Interaction Sites from PAR-CLIP experimentsAhsan H Polash, Markus HafnerNucleic Acids Research|February 3, 2026
PCLIPtools: a robust framework for identifying RNA-protein interaction sites from PAR-CLIP experimentsAhsan H Polash, Markus HafnerBiorxiv : the Preprint Server for Biology|April 29, 2026
The human DEAD-box protein DDX3X regulates host and viral mRNA translation during Sendai Virus infectionCathal S Ryan, Dimitrios G Anastasakis, Ahsan H Polash, et al.Biorxiv : the Preprint Server for Biology|December 31, 2025
RBProximity-CLIP Enables Subcellular Mapping of RNA-Binding Protein Interactions at Nucleotide ResolutionIwona Nowak, Ahsan H Polash, Hang T Huynh, et al.Molecular Cell|August 17, 2024
Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory roleDimitrios G Anastasakis, Maria Apostolidi, Khalid A Garman, et al.Biorxiv : the Preprint Server for Biology|April 29, 2026
Single-cell profiling reveals pervasive heterogeneity in subcellular RNA localizationXiaojuan Fan, Markus HafnerMethods in Molecular Biology (Clifton, N.J.)|July 26, 2020
Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide ScaleDaniel Benhalevy, Markus HafnerRNA Biology|April 11, 2026
RNA G-Quadruplex-protein interactions: from nuclear RNA processing to cytoplasmic stress response and neurodegenerationDimitrios G Anastasakis, Markus HafnerBiorxiv : the Preprint Server for Biology|October 3, 2025
The DND1-NANOS3 complex shapes the primordial germ cell transcriptome via a heptanucleotide sequence in mRNA 3' UTRsMasataka Suzawa, Chen Qiu, Ahsan H Polash, et al.Methods in Molecular Biology (Clifton, N.J.)|October 25, 2021
PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction SitesCharles Danan, Sudhir Manickavel, Markus HafnerPageof 14