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Nucleic Acids Research|December 19, 2025
InCURA: integrative gene clustering based on transcription factor binding sitesLorna Rinck, Ricardo O Ramirez Flores, Julio Saez-Rodriguez, et al.Cell Reports|October 3, 2019
Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component AnalysisDamien Arnol, Denis Schapiro, Bernd Bodenmiller, et al.Journal of Proteome Research|March 8, 2021
PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry DataEnio Gjerga, Aurelien Dugourd, Luis Tobalina, et al.Drug Discovery Today|August 18, 2012
Transcriptional data: a new gateway to drug repositioning?Francesco Iorio, Timothy Rittman, Hong Ge, et al.Molecular Systems Biology|July 26, 2022
Integrating knowledge and omics to decipher mechanisms via large-scale models of signaling networksMartin Garrido-Rodriguez, Katharina Zirngibl, Olga Ivanova, et al.Bioinformatics (Oxford, England)|February 16, 2017
Benchmarking substrate-based kinase activity inference using phosphoproteomic dataClaudia Hernandez-Armenta, David Ochoa, Emanuel Gonçalves, et al.Biochemistry|March 16, 2010
Logic-based models for the analysis of cell signaling networksMelody K Morris, Julio Saez-Rodriguez, Peter K Sorger, et al.Nature Immunology|February 27, 2024
Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune systemPhilipp Sven Lars Schäfer, Daniel Dimitrov, Eduardo J Villablanca, et al.Cell Reports Methods|March 31, 2026
Topography-aware optimal transport for alignment of spatial omics dataFrancesco Ceccarelli, Pietro Liò, Julio Saez-Rodriguez, et al.Progress in Lipid Research|December 15, 2015
The orchestra of lipid-transfer proteins at the crossroads between metabolism and signalingAntonella Chiapparino, Kenji Maeda, Denes Turei, et al.Pageof 35