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Plos Computational Biology|March 21, 2009
T-cell epitope prediction: rescaling can mask biological variation between MHC moleculesAidan MacNamara, Ulrich Kadolsky, Charles R M Bangham, et al.
Proceedings of the National Academy of Sciences of the United States of America|June 11, 2015
Empirical inference of circuitry and plasticity in a kinase signaling networkEdmund H Wilkes, Camille Terfve, John G Gribben, et al.
Nature Communications|June 11, 2024
DOT: a flexible multi-objective optimization framework for transferring features across single-cell and spatial omicsArezou Rahimi, Luis A Vale-Silva, Maria Fälth Savitski, et al.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|November 25, 2010
Construction of signaling pathways and identification of drug effects on the liver cancer cell HepG2Leonidas G Alexopoulos, Ioannis N Melas, Aikaterini D Chairakaki, et al.
Bioinformatics (Oxford, England)|June 27, 2012
Integrating literature-constrained and data-driven inference of signalling networksFederica Eduati, Javier De Las Rivas, Barbara Di Camillo, et al.
Briefings in Bioinformatics|April 9, 2021
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signallingAlexander Mazein, Adrien Rougny, Jonathan R Karr, et al.
Elife|November 22, 2023
Multicellular factor analysis of single-cell data for a tissue-centric understanding of diseaseRicardo Omar Ramirez Flores, Jan David Lanzer, Daniel Dimitrov, et al.
Cell Systems|October 17, 2017
Widespread Post-transcriptional Attenuation of Genomic Copy-Number Variation in CancerEmanuel Gonçalves, Athanassios Fragoulis, Luz Garcia-Alonso, et al.
BMC Bioinformatics|December 22, 2016
Efficient randomization of biological networks while preserving functional characterization of individual nodesFrancesco Iorio, Marti Bernardo-Faura, Andrea Gobbi, et al.
BMC Bioinformatics|November 18, 2006
Visual setup of logical models of signaling and regulatory networks with ProMoTJulio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, et al.
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