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Scientific Reports|February 28, 2019
Alignment-free similarity analysis for protein sequences based on fuzzy integralAjay Kumar Saw, Binod Chandra Tripathy, Soumyadeep Nandi
Scientific Reports|March 8, 2019
Alignment-free method for DNA sequence clustering using Fuzzy integral similarityAjay Kumar Saw, Garima Raj, Manashi Das, et al.
Frontiers in Genetics|April 14, 2025
Integrated promoter-capture Hi-C and Hi-C analysis reveals fine-tuned regulation of the 3D chromatin architecture in colorectal cancerAjay Kumar Saw, Ayush Madhok, Anupam Bhattacharya, et al.
Annals of Data Science|April 16, 2024
Application of Neutrosophic Similarity Measures in Covid-19Rakhal Das, Anjan Mukherjee, Binod Chandra Tripathy
BMC Genomics|August 24, 2012
Optimizing the GATA-3 position weight matrix to improve the identification of novel binding sitesSoumyadeep Nandi, Ilya Ioshikhes
Nucleic Acids Research|August 6, 2013
Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factorsSoumyadeep Nandi, Alexandre Blais, Ilya Ioshikhes
BMC Genomics|September 10, 2005
Comparison of theoretical proteomes: identification of COGs with conserved and variable pI within the multimodal pI distributionSoumyadeep Nandi, Nipun Mehra, Andrew M Lynn, et al.
Advances in Bioinformatics|May 5, 2011
ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission ProbabilitiesDhwani K Desai, Soumyadeep Nandi, Prashant K Srivastava, et al.
Bioinformatics (Oxford, England)|December 28, 2020
ProkSeq for complete analysis of RNA-Seq data from prokaryotesA K M Firoj Mahmud, Nicolas Delhomme, Soumyadeep Nandi, et al.
BMC Bioinformatics|March 29, 2007
HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequencesPrashant K Srivastava, Dhwani K Desai, Soumyadeep Nandi, et al.
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