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Journal of Chemical Information and Modeling|January 27, 2026
Applied Causality to Infer Protein Dynamics and KineticsAkashnathan Aranganathan, Eric R BeyerleElife|September 6, 2024
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVEXinyu Gu, Akashnathan Aranganathan, Pratyush TiwaryArxiv|April 25, 2024
Empowering AlphaFold2 for protein conformation selective drug discovery with AlphaFold2-RAVEXinyu Gu, Akashnathan Aranganathan, Pratyush TiwaryCurrent Research in Structural Biology|July 8, 2021
Thermodynamics and folding landscapes of large proteins from a statistical mechanical modelSoundhararajan Gopi, Akashnathan Aranganathan, Athi N NaganathanCurrent Research in Structural Biology|July 8, 2021
Erratum to "Thermodynamics and folding landscapes of large proteins from a statistical mechanical model" [Current Research in Structural Biology 1 (2019) 6-12]Soundhararajan Gopi, Akashnathan Aranganathan, Athi N NaganathanArxiv|September 21, 2023
Exploring kinase DFG loop conformational stability with AlphaFold2-RAVEBodhi P Vani, Akashnathan Aranganathan, Pratyush TiwaryJournal of Chemical Information and Modeling|November 20, 2023
Exploring Kinase Asp-Phe-Gly (DFG) Loop Conformational Stability with AlphaFold2-RAVEBodhi P Vani, Akashnathan Aranganathan, Pratyush TiwaryJournal of Chemical Theory and Computation|May 12, 2023
AlphaFold2-RAVE: From Sequence to Boltzmann RankingBodhi P Vani, Akashnathan Aranganathan, Dedi Wang, et al.Current Opinion in Structural Biology|February 9, 2025
Modeling Boltzmann-weighted structural ensembles of proteins using artificial intelligence-based methodsAkashnathan Aranganathan, Xinyu Gu, Dedi Wang, et al.Journal of Molecular Biology|October 25, 2021
Folding Intermediates, Heterogeneous Native Ensembles and Protein FunctionAthi N Naganathan, Rahul Dani, Soundhararajan Gopi, et al.Pageof 3