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Biophysical Reviews|November 29, 2017
Molecular dynamics simulation of bacterial flagellaAkio Kitao, Hiroaki HataBiochimica Et Biophysica Acta. General Subjects|July 15, 2019
Molecular dynamics simulation of proteins under high pressure: Structure, function and thermodynamicsHiroaki Hata, Masayoshi Nishiyama, Akio KitaoBiophysics and Physicobiology|February 18, 2022
Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state modelHiroaki Hata, Duy Phuoc Tran, Mohamed Marzouk Sobeh, et al.Scientific Reports|February 13, 2020
High pressure inhibits signaling protein binding to the flagellar motor and bacterial chemotaxis through enhanced hydrationHiroaki Hata, Yasutaka Nishihara, Masayoshi Nishiyama, et al.Methods in Molecular Biology (Clifton, N.J.)|February 26, 2023
Molecular Simulation to Investigate Open-Close Motion of a Flagellar Export Apparatus Protein FlhA<sub>C</sub>Akio KitaoThe Journal of Chemical Physics|August 3, 2011
Transform and relax sampling for highly anisotropic systems: application to protein domain motion and foldingAkio KitaoThe Journal of Physical Chemistry. B|June 9, 2011
Exploring the folding free energy landscape of a β-hairpin miniprotein, chignolin, using multiscale free energy landscape calculation methodRyuhei Harada, Akio KitaoBiophysics and Physicobiology|January 28, 2020
More efficient screening of protein-protein complex model structures for reducing the number of candidatesKazuhiro Takemura, Akio KitaoThe Journal of Chemical Physics|October 15, 2013
MuSTAR MD: multi-scale sampling using temperature accelerated and replica exchange molecular dynamicsYu Yamamori, Akio KitaoCurrent Opinion in Structural Biology|November 6, 2016
High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environmentsAkio Kitao, Kazuhiro TakemuraPageof 21