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Biophysics and Physicobiology|January 28, 2020
More efficient screening of protein-protein complex model structures for reducing the number of candidatesKazuhiro Takemura, Akio KitaoCurrent Opinion in Structural Biology|November 6, 2016
High anisotropy and frustration: the keys to regulating protein function efficiently in crowded environmentsAkio Kitao, Kazuhiro TakemuraThe Journal of Physical Chemistry. B|May 17, 2012
Water model tuning for improved reproduction of rotational diffusion and NMR spectral densityKazuhiro Takemura, Akio KitaoThe Journal of Physical Chemistry. B|September 25, 2007
Effects of water model and simulation box size on protein diffusional motionsKazuhiro Takemura, Akio KitaoThe Journal of Physical Chemistry. B|July 12, 2018
ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics SimulationKazuhiro Takemura, Chika Sato, Akio KitaoThe Journal of Chemical Physics|March 17, 2018
Binding free energy analysis of protein-protein docking model structures by evERdockKazuhiro Takemura, Nobuyuki Matubayasi, Akio KitaoPlos One|January 28, 2014
Mechanism of deep-sea fish α-actin pressure tolerance investigated by molecular dynamics simulationsNobuhiko Wakai, Kazuhiro Takemura, Takami Morita, et al.The Journal of Chemical Physics|November 24, 2018
Refining evERdock: Improved selection of good protein-protein complex models achieved by MD optimization and use of multiple conformationsAi Shinobu, Kazuhiro Takemura, Nobuyuki Matubayasi, et al.Journal of Chemical Theory and Computation|November 29, 2017
Protein-Ligand Dissociation Simulated by Parallel Cascade Selection Molecular DynamicsDuy Phuoc Tran, Kazuhiro Takemura, Kazuo Kuwata, et al.Scientific Reports|July 30, 2017
Salt Bridge Formation between the I-BAR Domain and Lipids Increases Lipid Density and Membrane CurvatureKazuhiro Takemura, Kyoko Hanawa-Suetsugu, Shiro Suetsugu, et al.Pageof 11