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Nature Communications|December 9, 2022
Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experimentsGennady Gorin, John J Vastola, Meichen Fang, et al.Biorxiv : the Preprint Server for Biology|March 10, 2025
Geospatially informed representation of spatial genomics data with SpatialFeatureExperimentLambda Moses, Alik Huseynov, Joseph M Rich, et al.Nucleic Acids Research|March 14, 2015
A diverse epigenetic landscape at human exons with implication for expressionMeromit Singer, Idit Kosti, Lior Pachter, et al.Nature Biotechnology|April 5, 2016
Near-optimal probabilistic RNA-seq quantificationNicolas L Bray, Harold Pimentel, Páll Melsted, et al.Genome Biology|April 14, 2018
Gene-level differential analysis at transcript-level resolutionLynn Yi, Harold Pimentel, Nicolas L Bray, et al.Elife|August 29, 2014
RNA-guided assembly of Rev-RRE nuclear export complexesYun Bai, Akshay Tambe, Kaihong Zhou, et al.BMC Bioinformatics|December 2, 2016
The Lair: a resource for exploratory analysis of published RNA-Seq dataHarold Pimentel, Pascal Sturmfels, Nicolas Bray, et al.Nature Methods|July 25, 2024
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing dataMaria Carilli, Gennady Gorin, Yongin Choi, et al.Biorxiv : the Preprint Server for Biology|January 30, 2023
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing dataMaria Carilli, Gennady Gorin, Yongin Choi, et al.Biorxiv : the Preprint Server for Biology|February 6, 2026
Uniform pre-processing of bacterial single-cell RNA-seqConrad Oakes, Vera Beilinson, Margaret J McFall-Ngai, et al.Pageof 20