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Genome Research|March 6, 2003
SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov modelMarina Alexandersson, Simon Cawley, Lior PachterStatistics in Medicine|June 5, 2019
Factor analysis for survival time prediction with informative censoring and diverse covariatesShannon McCurdy, Annette Molinaro, Lior PachterMolecular Biology and Evolution|November 11, 2005
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimatesDan Levy, Ruriko Yoshida, Lior PachterBulletin of Mathematical Biology|September 18, 2007
Toward the human genotopePeter Huggins, Lior Pachter, Bernd SturmfelsNature Computational Science|September 24, 2024
Biophysically interpretable inference of cell types from multimodal sequencing dataTara Chari, Gennady Gorin, Lior PachterPhysical Review. E|December 23, 2025
Analogies between the virial theorem and the Price equationCatherine Felce, Steinunn Liorsdóttir, Lior PachterPhysical Review. E|February 7, 2025
Biophysical model for joint analysis of chromatin and RNA sequencing dataCatherine Felce, Gennady Gorin, Lior PachterBMC Bioinformatics|December 10, 2013
Fragment assignment in the cloud with eXpress-DAdam Roberts, Harvey Feng, Lior PachterBioinformatics (Oxford, England)|May 11, 2019
The barcode, UMI, set format and BUStoolsPáll Melsted, Vasilis Ntranos, Lior PachterGenome Biology|February 20, 2020
Protein velocity and acceleration from single-cell multiomics experimentsGennady Gorin, Valentine Svensson, Lior PachterPageof 20