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Bioinformatics (Oxford, England)|March 21, 2008
Combining statistical alignment and phylogenetic footprinting to detect regulatory elementsRahul Satija, Lior Pachter, Jotun HeinPlos Computational Biology|January 21, 2025
Trajectory inference from single-cell genomics data with a process time modelMeichen Fang, Gennady Gorin, Lior PachterPlos One|January 26, 2019
Deterministic column subset selection for single-cell RNA-SeqShannon R McCurdy, Vasilis Ntranos, Lior PachterBioinformatics (Oxford, England)|March 18, 2009
TopHat: discovering splice junctions with RNA-SeqCole Trapnell, Lior Pachter, Steven L SalzbergBioinformatics (Oxford, England)|April 5, 2024
A machine-readable specification for genomics assaysAli Sina Booeshaghi, Xi Chen, Lior PachterBioinformatics (Oxford, England)|September 18, 2008
Specific alignment of structured RNA: stochastic grammars and sequence annealingRobert K Bradley, Lior Pachter, Ian HolmesBMC Bioinformatics|January 14, 2011
Shape-based peak identification for ChIP-SeqValerie Hower, Steven N Evans, Lior PachterBMC Bioinformatics|August 20, 2010
Coverage statistics for sequence census methodsSteven N Evans, Valerie Hower, Lior PachterCell Systems|September 26, 2023
Studying stochastic systems biology of the cell with single-cell genomics dataGennady Gorin, John J Vastola, Lior PachterBiorxiv : the Preprint Server for Biology|June 9, 2023
Studying stochastic systems biology of the cell with single-cell genomics dataGennady Gorin, John J Vastola, Lior PachterPageof 20