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Biorxiv : the Preprint Server for Biology|March 30, 2023
A machine-readable specification for genomics assaysA Sina Booeshaghi, Xi Chen, Lior PachterBiorxiv : the Preprint Server for Biology|June 4, 2025
Pseudoassembly of k-mersDelaney K Sullivan, Mayuko Boffelli, Lior PachterPlos One|June 3, 2020
RefShannon: A genome-guided transcriptome assembler using sparse flow decompositionShunfu Mao, Lior Pachter, David Tse, et al.Algorithms for Molecular Biology : AMB|May 2, 2008
On the optimality of the neighbor-joining algorithmKord Eickmeyer, Peter Huggins, Lior Pachter, et al.Biophysical Journal|May 8, 2024
Spectral neural approximations for models of transcriptional dynamicsGennady Gorin, Maria Carilli, Tara Chari, et al.Bioinformatics (Oxford, England)|July 21, 2012
Quantifying uniformity of mapped readsValerie Hower, Richard Starfield, Adam Roberts, et al.Nature Methods|January 22, 2019
A discriminative learning approach to differential expression analysis for single-cell RNA-seqVasilis Ntranos, Lynn Yi, Páll Melsted, et al.Bioinformatics (Oxford, England)|February 20, 2024
Fast and scalable querying of eukaryotic linear motifs with gget elmLaura Luebbert, Chi Hoang, Manjeet Kumar, et al.Plos Genetics|December 20, 2018
Expression reflects population structureBrielin C Brown, Nicolas L Bray, Lior PachterStatistical Applications in Genetics and Molecular Biology|September 4, 2007
The cyclohedron test for finding periodic genes in time course expression studiesJason Morton, Lior Pachter, Anne Shiu, et al.Pageof 20