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Biostatistics (Oxford, England)|May 31, 2023
Quantification and statistical modeling of droplet-based single-nucleus RNA-sequencing dataAlbert Kuo, Kasper D Hansen, Stephanie C HicksPlos Computational Biology|March 30, 2022
Addressing the mean-correlation relationship in co-expression analysisYi Wang, Stephanie C Hicks, Kasper D HansenNature Communications|July 10, 2023
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processesLukas M Weber, Arkajyoti Saha, Abhirup Datta, et al.Genome Biology|August 29, 2015
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic dataJean-Philippe Fortin, Kasper D HansenGenome Biology|December 1, 2019
methylCC: technology-independent estimation of cell type composition using differentially methylated regionsStephanie C Hicks, Rafael A IrizarryAnnual Review of Public Health|January 20, 2021
Reproducible Research: A RetrospectiveRoger D Peng, Stephanie C HicksGenome Biology|June 5, 2015
quantro: a data-driven approach to guide the choice of an appropriate normalization methodStephanie C Hicks, Rafael A IrizarryThe American Statistician|May 21, 2019
A Guide to Teaching Data ScienceStephanie C Hicks, Rafael A IrizarryGenome Biology|October 5, 2012
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regionsKasper D Hansen, Benjamin Langmead, Rafael A IrizarryNucleic Acids Research|April 17, 2010
Biases in Illumina transcriptome sequencing caused by random hexamer primingKasper D Hansen, Steven E Brenner, Sandrine DudoitPageof 20