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Genome Research|January 20, 2023
Robust analysis of prokaryotic pangenome gene gain and loss rates with PanstripeGerry Tonkin-Hill, Rebecca A Gladstone, Anna K Pöntinen, et al.
Microbial Genomics|November 23, 2018
PANINI: Pangenome Neighbour Identification for Bacterial PopulationsKhalil Abudahab, Joaquín M Prada, Zhirong Yang, et al.
The ISME Journal|January 7, 2021
Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structuresGabrielle L Harrow, John A Lees, William P Hanage, et al.
Microbial Genomics|November 15, 2021
Bacterial genomic epidemiology with mixed samplesTommi Mäklin, Teemu Kallonen, Jarno Alanko, et al.
Mbio|July 9, 2020
Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning RegressionsJohn A Lees, T Tien Mai, Marco Galardini, et al.
Plos Computational Biology|May 21, 2019
Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancerAlina Malyutina, Muntasir Mamun Majumder, Wenyu Wang, et al.
Microbial Genomics|March 29, 2019
rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic treeAlexander M Wailan, Francesc Coll, Eva Heinz, et al.
Rheumatology (Oxford, England)|April 6, 2017
Progression and mortality of interstitial lung disease in mixed connective tissue disease: a long-term observational nationwide cohort studySilje Reiseter, Ragnar Gunnarsson, Trond Mogens Aaløkken, et al.
Drug Resistance Updates : Reviews and Commentaries in Antimicrobial and Anticancer Chemotherapy|April 16, 2025
KpnK48 clone driving hypervirulent carbapenem-resistant Escherichia coli epidemics: Insights into its evolutionary trajectory similar to Klebsiella pneumoniaeMeng Wang, Longyang Jin, Ruobing Wang, et al.
Microbial Genomics|March 29, 2017
Directional gene flow and ecological separation in <i>Yersinia enterocolitica</i>Sandra Reuter, Jukka Corander, Mark de Been, et al.
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