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Microbial Genomics|February 11, 2026
Sequence type and strain-level detection of <i>Klebsiella pneumoniae</i> in culture-enriched bacterial metagenomes: comparative performance of mSWEEP and StrainGE bioinformatic toolsDorota Julia Buczek, Wasifa Kabir, Kenneth Lindstedt, et al.
The Lancet. Microbe|December 7, 2024
Geographical variation in the incidence of colorectal cancer and urinary tract cancer is associated with population exposure to colibactin-producing Escherichia coliTommi Mäklin, Aurora Taira, Sergio Arredondo-Alonso, et al.
Microbial Genomics|November 30, 2020
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, <i>Enterococcus faecium</i>Janetta Top, Sergio Arredondo-Alonso, Anita C Schürch, et al.
Nature Ecology & Evolution|October 18, 2017
Frequency-dependent selection in vaccine-associated pneumococcal population dynamicsJukka Corander, Christophe Fraser, Michael U Gutmann, et al.
Genome Research|July 20, 2017
Systematic longitudinal survey of invasive <i>Escherichia coli</i> in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131Teemu Kallonen, Hayley J Brodrick, Simon R Harris, et al.
BMC Genomics|September 5, 2020
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assembliesSara Lado, Jean P Elbers, Mark F Rogers, et al.
Mbio|July 19, 2012
Restricted gene flow among hospital subpopulations of Enterococcus faeciumRob J L Willems, Janetta Top, Willem van Schaik, et al.
Microbiology Spectrum|March 23, 2023
The COVID-19 Pandemic Sparked Off a Large-Scale Outbreak of Carbapenem-Resistant Acinetobacter baumannii from the Endemic Strains at an Italian HospitalGreta Petazzoni, Greta Bellinzona, Cristina Merla, et al.
Bioinformatics (Oxford, England)|April 10, 2020
gplas: a comprehensive tool for plasmid analysis using short-read graphsSergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, et al.
Genomics, Proteomics & Bioinformatics|January 27, 2022
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening DatasetsShuyu Zheng, Wenyu Wang, Jehad Aldahdooh, et al.
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