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Plos Computational Biology|November 20, 2023
Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisationSarvesh Nikumbh, Boris LenhardSeminars in Cell & Developmental Biology|January 20, 2016
Promoter architectures and developmental gene regulationVanja Haberle, Boris LenhardNucleic Acids Research|June 15, 2013
Chromatin and epigenetic features of long-range gene regulationNathan Harmston, Boris LenhardTranscription|March 30, 2012
Cross-species ChIP-seq studies provide insights into regulatory strategies of PPARγ in adipocytesSøren F Schmidt, Mette Jørgensen, Albin Sandelin, et al.Methods in Molecular Biology (Clifton, N.J.)|July 23, 2013
Detection of reverse transcriptase termination sites using cDNA ligation and massive parallel sequencingLukasz J Kielpinski, Mette Boyd, Albin Sandelin, et al.NAR Genomics and Bioinformatics|September 21, 2022
Computational identification of signals predictive for nuclear RNA exosome degradation pathway targetingMengjun Wu, Manfred Schmid, Torben Heick Jensen, et al.Genome Biology|September 28, 2021
Biologically relevant transfer learning improves transcription factor binding predictionGherman Novakovsky, Manu Saraswat, Oriol Fornes, et al.BMC Genomics|June 15, 2014
Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentRebecca Worsley Hunt, Anthony Mathelier, Luis Del Peso, et al.Nucleic Acids Research|June 25, 2004
MSCAN: identification of functional clusters of transcription factor binding sitesWynand B L Alkema, Ojvind Johansson, Jens Lagergren, et al.Bio Systems|October 27, 2015
The identification of cis-regulatory elements: A review from a machine learning perspectiveYifeng Li, Chih-Yu Chen, Alice M Kaye, et al.Pageof 41