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BMC Genomics|June 15, 2014
Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentRebecca Worsley Hunt, Anthony Mathelier, Luis Del Peso, et al.Nucleic Acids Research|June 25, 2004
MSCAN: identification of functional clusters of transcription factor binding sitesWynand B L Alkema, Ojvind Johansson, Jens Lagergren, et al.Bio Systems|October 27, 2015
The identification of cis-regulatory elements: A review from a machine learning perspectiveYifeng Li, Chih-Yu Chen, Alice M Kaye, et al.Bioinformatics (Oxford, England)|March 15, 2022
RevUP: an online scoring system for regulatory variants implicated in rare diseasesSolenne Correard, Brittany Hewitson, Robin van der Lee, et al.Plos One|September 3, 2011
Systematic clustering of transcription start site landscapesXiaobei Zhao, Eivind Valen, Brian J Parker, et al.Epigenetics & Chromatin|February 18, 2021
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencingBradley P Balaton, Oriol Fornes, Wyeth W Wasserman, et al.Genome Biology|June 27, 2023
ExplaiNN: interpretable and transparent neural networks for genomicsGherman Novakovsky, Oriol Fornes, Manu Saraswat, et al.BMC Bioinformatics|September 11, 2010
Multivariate Hawkes process models of the occurrence of regulatory elementsLisbeth Carstensen, Albin Sandelin, Ole Winther, et al.Nature Reviews. Genetics|October 3, 2022
Obtaining genetics insights from deep learning via explainable artificial intelligenceGherman Novakovsky, Nick Dexter, Maxwell W Libbrecht, et al.Journal of the American Medical Informatics Association : JAMIA|June 29, 2015
Dynamic software design for clinical exome and genome analyses: insights from bioinformaticians, clinical geneticists, and genetic counselorsCasper Shyr, Andre Kushniruk, Clara D M van Karnebeek, et al.Pageof 29