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Gigascience|April 22, 2020
SRPRISM (Single Read Paired Read Indel Substitution Minimizer): an efficient aligner for assemblies with explicit guaranteesAleksandr Morgulis, Richa AgarwalaJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 27, 2006
A fast and symmetric DUST implementation to mask low-complexity DNA sequencesAleksandr Morgulis, E Michael Gertz, Alejandro A Schäffer, et al.Bioinformatics (Oxford, England)|November 17, 2005
WindowMasker: window-based masker for sequenced genomesAleksandr Morgulis, E Michael Gertz, Alejandro A Schäffer, et al.Bioinformatics (Oxford, England)|June 24, 2008
Database indexing for production MegaBLAST searchesAleksandr Morgulis, George Coulouris, Yan Raytselis, et al.The FEBS Journal|October 13, 2005
Protein database searches using compositionally adjusted substitution matricesStephen F Altschul, John C Wootton, E Michael Gertz, et al.Plos One|May 13, 2025
dTOURS: Dense-region tagging for outbreak detection using ratio statisticsLukas Wagner, Richa AgarwalaBMC Bioinformatics|July 22, 2021
SAUTE: sequence assembly using target enrichmentAlexandre Souvorov, Richa AgarwalaBioinformatics (Oxford, England)|March 3, 2007
COBALT: constraint-based alignment tool for multiple protein sequencesJason S Papadopoulos, Richa AgarwalaNature Methods|May 16, 2024
Indexing and searching petabase-scale nucleotide resourcesSergey A Shiryev, Richa AgarwalaPlos One|January 19, 2024
Finding Candida auris in public metagenomic repositoriesJorge E Mario-Vasquez, Ujwal R Bagal, Elijah Lowe, et al.Pageof 6