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Viruses|February 27, 2026
CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM MicrographsRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.
Briefings in Bioinformatics|January 17, 2025
Artificial intelligence in cryo-EM protein particle picking: recent advances and remaining challengesAshwin Dhakal, Rajan Gyawali, Liguo Wang, et al.
Proteins|April 16, 2019
Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13Jie Hou, Tianqi Wu, Renzhi Cao, et al.
Biorxiv : the Preprint Server for Biology|January 18, 2024
CryoVirusDB: A Labeled Cryo-EM Image Dataset for AI-Driven Virus Particle PickingRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.
Bioinformatics (Oxford, England)|February 26, 2024
CryoTransformer: a transformer model for picking protein particles from cryo-EM micrographsAshwin Dhakal, Rajan Gyawali, Liguo Wang, et al.
Biorxiv : the Preprint Server for Biology|March 3, 2023
CryoPPP: A Large Expert-Labelled Cryo-EM Image Dataset for Machine Learning Protein Particle PickingAshwin Dhakal, Rajan Gyawali, Liguo Wang, et al.
Biorxiv : the Preprint Server for Biology|October 24, 2023
Accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and specialized U-NetRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.
Bioinformatics (Oxford, England)|May 7, 2016
FRAGSION: ultra-fast protein fragment library generation by IOHMM samplingDebswapna Bhattacharya, Badri Adhikari, Jilong Li, et al.
Nucleic Acids Research|May 1, 2016
3Drefine: an interactive web server for efficient protein structure refinementDebswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, et al.
Scientific Reports|December 5, 2015
Improving Protein Fold Recognition by Deep Learning NetworksTaeho Jo, Jie Hou, Jesse Eickholt, et al.
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