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BMC Bioinformatics|July 27, 2014
Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling informationXin Deng, Jianlin ChengBMC Bioinformatics|January 27, 2018
CONFOLD2: improved contact-driven ab initio protein structure modelingBadri Adhikari, Jianlin ChengBMC Bioinformatics|April 20, 2022
DISTEMA: distance map-based estimation of single protein model accuracy with attentive 2D convolutional neural networkXiao Chen, Jianlin ChengNucleic Acids Research|January 28, 2014
Large-scale reconstruction of 3D structures of human chromosomes from chromosomal contact dataTuan Trieu, Jianlin ChengBiomolecules|November 27, 2024
Correction: Giri et al. Improving Protein-Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge. Biomolecules 2023, 13, 132Nabin Giri, Jianlin ChengBiorxiv : the Preprint Server for Biology|January 23, 2024
De Novo Atomic Protein Structure Modeling for Cryo-EM Density Maps Using 3D Transformer and Hidden Markov ModelNabin Giri, Jianlin ChengProteins|August 29, 2012
3Drefine: consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimizationDebswapna Bhattacharya, Jianlin ChengBioinformatics (Oxford, England)|June 18, 2005
Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithmsJianlin Cheng, Pierre BaldiMethods in Molecular Biology (Clifton, N.J.)|October 31, 2013
MSACompro: improving multiple protein sequence alignment by predicted structural featuresXin Deng, Jianlin ChengNature Communications|July 1, 2024
De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMMNabin Giri, Jianlin ChengPageof 30