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Protein and Peptide Letters|May 21, 2015
An Improved Integration of Template-Based and Template-Free Protein Structure Modeling Methods and its Assessment in CASP11Jilong Li, Badri Adhikari, Jianlin ChengBioinformatics (Oxford, England)|May 7, 2011
APOLLO: a quality assessment service for single and multiple protein modelsZheng Wang, Jesse Eickholt, Jianlin ChengProteins|October 20, 2017
Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learningBadri Adhikari, Jie Hou, Jianlin ChengBMC Proceedings|November 7, 2014
Reconstruction of metabolic pathways by combining probabilistic graphical model-based and knowledge-based methodsQi Qi, Jilong Li, Jianlin ChengBiorxiv : the Preprint Server for Biology|May 4, 2026
Improving AlphaFold3 by Engineering MSA and Template InputsPawan Neupane, Jian Liu, Jianlin ChengBMC Structural Biology|April 16, 2014
Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experimentRenzhi Cao, Zheng Wang, Jianlin ChengBiorxiv : the Preprint Server for Biology|January 30, 2023
Combining protein sequences and structures with transformers and equivariant graph neural networks to predict protein functionFrimpong Boadu, Hongyuan Cao, Jianlin ChengBioinformatics (Oxford, England)|February 13, 2010
MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8Zheng Wang, Jesse Eickholt, Jianlin ChengBioinformatics (Oxford, England)|March 4, 2025
CryoTEN: efficiently enhancing cryo-EM density maps using transformersJoel Selvaraj, Liguo Wang, Jianlin ChengBMC Bioinformatics|February 3, 2011
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learningJesse Eickholt, Xin Deng, Jianlin ChengPageof 30