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Biorxiv : the Preprint Server for Biology|February 27, 2026
The Stochastic System Identification Toolkit (SSIT) to model, fit, predict, and design experimentsAlex N Popinga, Jack Forman, Dmitri Svetlov, et al.Proceedings of the ... IEEE Conference on Decision & Control. IEEE Conference on Decision & Control|July 10, 2025
Sequential design of single-cell experiments to identify discrete stochastic models for gene expressionJoshua Cook, Eric Ron, Dmitri Svetlov, et al.ACS Infectious Diseases|October 6, 2021
Reductionism <i>Ad Absurdum</i>: The Misadventures of Structural Biology in the Time of CoronavirusDmitri Svetlov, Irina ArtsimovitchNucleic Acids Research|August 5, 2021
NMPylation and de-NMPylation of SARS-CoV-2 nsp9 by the NiRAN domainBing Wang, Dmitri Svetlov, Irina ArtsimovitchPhysical Biology|June 19, 2015
From analog to digital models of gene regulationBrian Munsky, Gregor NeuertThe Journal of Chemical Physics|February 8, 2006
The finite state projection algorithm for the solution of the chemical master equationBrian Munsky, Mustafa KhammashPhysical Biology|April 22, 2017
The finite state projection approach to analyze dynamics of heterogeneous populationsRob Johnson, Brian MunskyACS Synthetic Biology|November 18, 2021
Exploiting Noise, Non-Linearity, and Feedback for Differential Control of Multiple Synthetic Cells with a Single Optogenetic InputMichael P May, Brian MunskyPlos Computational Biology|January 16, 2019
The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experimentsZachary R Fox, Brian MunskyNucleic Acids Research|June 13, 2017
Flipping states: a few key residues decide the winning conformation of the only universally conserved transcription factorDa Shi, Dmitri Svetlov, Ruben Abagyan, et al.Pageof 9