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Methods in Molecular Biology (Clifton, N.J.)|March 17, 2023
A Primer on Preprocessing, Visualization, Clustering, and Phenotyping of Barcode-Based Spatial Transcriptomics DataOscar Ospina, Alex Soupir, Brooke L FridleyHuman Molecular Genetics|December 1, 2021
Novel role of prostate cancer risk variant rs7247241 on PPP1R14A isoform transition through allelic TF binding and CpG methylationYijun Tian, Alex Soupir, Qian Liu, et al.Cancers|October 14, 2022
Plasma Copy Number Alteration-Based Prognostic and Predictive Multi-Gene Risk Score in Metastatic Castration-Resistant Prostate CancerJinyong Huang, Meijun Du, Alex Soupir, et al.Biorxiv : the Preprint Server for Biology|January 30, 2023
curatedPCaData: Integration of clinical, genomic, and signature features in a curated and harmonized prostate cancer data resourceTeemu D Laajala, Varsha Sreekanth, Alex Soupir, et al.Nature Communications|November 13, 2025
Multicellular immune ecotypes within solid tumors predict real-world therapeutic benefits with immune checkpoint inhibitorsXuefeng Wang, Tingyi Li, Islam Eljilany, et al.Nature Communications|May 6, 2025
Genomic, transcriptomic, and immunogenomic landscape of over 1300 sarcomas of diverse histology subtypesAlex Soupir, Oscar E Ospina, Oliver Hampton, et al.Pageof 1