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BMC Bioinformatics|October 14, 2022
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutationsAlexander Churkin, Yann Ponty, Danny BarashBioinformatics (Oxford, England)|January 24, 2020
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAsMatan Drory Retwitzer, Vladimir Reinharz, Alexander Churkin, et al.Briefings in Bioinformatics|January 4, 2017
Design of RNAs: comparing programs for inverse RNA foldingAlexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz, et al.Wiley Interdisciplinary Reviews. RNA|February 7, 2013
RNA dot plots: an image representation for RNA secondary structure analysis and manipulationsAlexander Churkin, Danny BarashBriefings in Bioinformatics|March 23, 2011
Mutational analysis in RNAs: comparing programs for RNA deleterious mutation predictionDanny Barash, Alexander ChurkinBMC Bioinformatics|April 28, 2006
RNAmute: RNA secondary structure mutation analysis toolAlexander Churkin, Danny BarashBMC Bioinformatics|May 1, 2008
An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutionsAlexander Churkin, Danny BarashComputational Biology and Chemistry|November 14, 2012
On topological indices for small RNA graphsAlexander Churkin, Idan Gabdank, Danny BarashNucleic Acids Research|April 12, 2011
The RNAmute web server for the mutational analysis of RNA secondary structuresAlexander Churkin, Idan Gabdank, Danny BarashBMC Bioinformatics|August 5, 2011
RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequencesAssaf Avihoo, Alexander Churkin, Danny BarashPageof 11