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Methods in Molecular Biology (Clifton, N.J.)|September 23, 2024
RNA Design Using incaRNAfbinv Demonstrated with the Identification of Functional RNA Motifs in Hepatitis Delta VirusRami Zakh, Alexander Churkin, Danny BarashMethods in Molecular Biology (Clifton, N.J.)|January 12, 2015
Free energy minimization to predict RNA secondary structures and computational RNA designAlexander Churkin, Lina Weinbrand, Danny BarashAlgorithms for Molecular Biology : AMB|September 11, 2012
Efficient procedures for the numerical simulation of mid-size RNA kineticsIddo Aviram, Ilia Veltman, Alexander Churkin, et al.Mathematics (Basel, Switzerland)|October 17, 2022
Advances in Parameter Estimation and Learning from Data for Mathematical Models of Hepatitis C Viral KineticsVladimir Reinharz, Alexander Churkin, Harel Dahari, et al.Plos One|April 11, 2014
RNAthermsw: direct temperature simulations for predicting the location of RNA thermometersAlexander Churkin, Assaf Avihoo, Michal Shapira, et al.Briefings in Bioinformatics|June 19, 2026
RNA design: update on computational frameworks and programs for inverse RNA foldingSumit Mukherjee, Rami Zakh, Alexander Churkin, et al.Frontiers in Applied Mathematics and Statistics|March 12, 2019
A Robust and Efficient Numerical Method for RNA-Mediated Viral DynamicsVladimir Reinharz, Alexander Churkin, Harel Dahari, et al.Nucleic Acids Research|May 18, 2016
incaRNAfbinv: a web server for the fragment-based design of RNA sequencesMatan Drory Retwitzer, Vladimir Reinharz, Yann Ponty, et al.Journal of Bioinformatics and Computational Biology|December 2, 2010
Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCVAlexander Churkin, Moriah Cohen, Yonat Shemer-Avni, et al.Bulletin of Mathematical Biology|July 25, 2019
A Parameter Estimation Method for Multiscale Models of Hepatitis C Virus DynamicsVladimir Reinharz, Alexander Churkin, Stephanie Lewkiewicz, et al.Pageof 11