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Cell|February 3, 2015
Extensive strain-level copy-number variation across human gut microbiome speciesSharon Greenblum, Rogan Carr, Elhanan BorensteinCell Metabolism|September 2, 2014
Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiomeOhad Manor, Roie Levy, Elhanan BorensteinBioinformatics (Oxford, England)|September 19, 2025
KADAIF: an anomaly detection method for complex microbiome dataOmri Peleg, Maya Raytan, Elhanan BorensteinNature Communications|March 24, 2024
Multi-omic integration of microbiome data for identifying disease-associated modulesEfrat Muller, Itamar Shiryan, Elhanan BorensteinTheoretical Population Biology|January 24, 2006
Cultural niche construction in a metapopulationElhanan Borenstein, Jeremy Kendal, Marcus FeldmanBiorxiv : the Preprint Server for Biology|July 18, 2023
Multi-omic integration of microbiome data for identifying disease-associated modulesEfrat Muller, Itamar Shiryan, Elhanan BorensteinBiorxiv : the Preprint Server for Biology|April 10, 2026
MAAMOUL: Metabolic network-based discovery of microbiome-metabolome shifts in diseaseEfrat Muller, Shiri Baum, Elhanan BorensteinNature Microbiology|April 21, 2026
Navigating multi-omic integration methods for human microbiome researchEfrat Muller, Tal Bamberger, Elhanan BorensteinMsystems|May 31, 2016
Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic VariationCecilia Noecker, Alexander Eng, Sujatha Srinivasan, et al.Proceedings of the National Academy of Sciences of the United States of America|December 21, 2011
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel diseaseSharon Greenblum, Peter J Turnbaugh, Elhanan BorensteinPageof 13