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Genetics|May 20, 2016
Epistasis and the Dynamics of Reversion in Molecular EvolutionDavid M McCandlish, Premal Shah, Joshua B PlotkinProceedings of the National Academy of Sciences of the United States of America|June 10, 2015
Contingency and entrenchment in protein evolution under purifying selectionPremal Shah, David M McCandlish, Joshua B PlotkinEvolution; International Journal of Organic Evolution|January 30, 2013
A parametric method for assessing diversification-rate variation in phylogenetic treesPremal Shah, Benjamin M Fitzpatrick, James A FordyceEvolutionary Bioinformatics Online|August 16, 2014
iteRates: An R Package for Implementing a Parametric Rate Comparison on Phylogenetic TreesJames A Fordyce, Premal Shah, Benjamin M FitzpatrickPlos Genetics|June 9, 2026
The importance of nonsense errors: Estimating the rates and implications of ribosome drop-off during protein synthesisAlexander L Cope, Denizhan Pak, Michael A GilchristScience (New York, N.Y.)|March 6, 2025
Macroevolutionary divergence of gene expression driven by selection on protein abundanceAlexander L Cope, Joshua G Schraiber, Matt PennellMolecular Phylogenetics and Evolution|September 12, 2015
A codon model of nucleotide substitution with selection on synonymous codon usageLaura Kubatko, Premal Shah, Radu Herbei, et al.Molecular Biology and Evolution|July 27, 2023
On the Decoupling of Evolutionary Changes in mRNA and Protein LevelsDaohan Jiang, Alexander L Cope, Jianzhi Zhang, et al.Biorxiv : the Preprint Server for Biology|April 17, 2023
Decoupling of evolutionary changes in mRNA and protein levelsDaohan Jiang, Alexander L Cope, Jianzhi Zhang, et al.Biochimica Et Biophysica Acta. Biomembranes|October 4, 2018
Quantifying codon usage in signal peptides: Gene expression and amino acid usage explain apparent selection for inefficient codonsAlexander L Cope, Robert L Hettich, Michael A GilchristPageof 7