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Trends in Pharmacological Sciences|August 12, 2014
Lean Big Data integration in systems biology and systems pharmacologyAvi Ma'ayan, Andrew D Rouillard, Neil R Clark, et al.Bioinformatics (Oxford, England)|September 1, 2018
Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signaturesZichen Wang, Edward He, Kevin Sani, et al.Bioinformatics Advances|October 13, 2025
sc2DAT: workflow for targeting tumor subpopulations of single cellsGiacomo B Marino, Anna I Byrd, Nasheath Ahmed, et al.Nucleic Acids Research|May 5, 2016
Enrichr: a comprehensive gene set enrichment analysis web server 2016 updateMaxim V Kuleshov, Matthew R Jones, Andrew D Rouillard, et al.Nucleic Acids Research|November 9, 2019
LINCS Data Portal 2.0: next generation access point for perturbation-response signaturesVasileios Stathias, John Turner, Amar Koleti, et al.Studies in Health Technology and Informatics|July 2, 2020
Towards Intelligent Integration and Sharing of Stem Cell Research DataKirill Borziak, Tianye Qi, John Erol Evangelista, et al.Bioinformatics (Oxford, England)|November 15, 2011
Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layersEdward Y Chen, Huilei Xu, Simon Gordonov, et al.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine|February 6, 2016
Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis ToolNeil R Clark, Maciej Szymkiewicz, Zichen Wang, et al.Current Protocols|July 25, 2022
Getting Started with LINCS Datasets and ToolsZhuorui Xie, Eryk Kropiwnicki, Megan L Wojciechowicz, et al.BMC Bioinformatics|September 13, 2022
Transforming L1000 profiles to RNA-seq-like profiles with deep learningMinji Jeon, Zhuorui Xie, John E Evangelista, et al.Pageof 23