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Database : the Journal of Biological Databases and Curation|July 5, 2016
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteinsAndrew D Rouillard, Gregory W Gundersen, Nicolas F Fernandez, et al.Bioinformatics (Oxford, England)|May 7, 2016
ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual informationAlexander Lachmann, Federico M Giorgi, Gonzalo Lopez, et al.Journal of Molecular Biology|March 26, 2025
lncRNAlyzr: Enrichment Analysis for lncRNA SetsJohn Erol Evangelista, Tahleel Ali-Nasser, Lauren E Malek, et al.Biorxiv : the Preprint Server for Biology|July 10, 2026
Cerebellar microRNA-206 tunes Purkinje neuron firing dynamics to control sensorimotor gatingMary P Heyer, Masago Ishikawa, Junshi Wang, et al.BMC Bioinformatics|April 17, 2013
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis toolEdward Y Chen, Christopher M Tan, Yan Kou, et al.Nucleic Acids Research|May 21, 2026
ChEA-KG and ChEA-KG-TS: a network-based transcription factor enrichment analysis tool with an accompanying time-series workflowAnna I Byrd, John Erol Evangelista, Andrew Van Dusen, et al.Current Protocols|September 16, 2025
Creating an Interactive Web Interface for Networks Stored in Knowledge Graph DatabasesJohn Erol Evangelista, Andrew D Lutsky, Anna I Byrd, et al.Bioinformatics (Oxford, England)|May 7, 2016
Detection and removal of spatial bias in multiwell assaysAlexander Lachmann, Federico M Giorgi, Mariano J Alvarez, et al.STAR Protocols|November 20, 2024
Protocol for using Multiomics2Targets to identify targets and driver kinases for cancer cohorts profiled with multi-omics assaysGiacomo B Marino, Eden Z Deng, Daniel J B Clarke, et al.Nucleic Acids Research|May 11, 2023
GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discoveryGiacomo B Marino, Michael Ngai, Daniel J B Clarke, et al.Pageof 23