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Science Signaling|September 16, 2011
Introduction to statistical methods for analyzing large data sets: gene-set enrichment analysisNeil R Clark, Avi Ma'ayanNucleic Acids Research|May 21, 2021
KEA3: improved kinase enrichment analysis via data integrationMaxim V Kuleshov, Zhuorui Xie, Alexandra B K London, et al.Neurorx : the Journal of the American Society for Experimental Neurotherapeutics|July 4, 2006
The cognitive phenotype of Down syndrome: insights from intracellular network analysisAvi Ma'ayan, Katheleen Gardiner, Ravi IyengarNucleic Acids Research|May 10, 2019
modEnrichr: a suite of gene set enrichment analysis tools for model organismsMaxim V Kuleshov, Jennifer E L Diaz, Zachary N Flamholz, et al.Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|August 16, 2006
Topology of resultant networks shaped by evolutionary pressureAvi Ma'ayan, Azi Lipshtat, Ravi IyengarPeerj|November 13, 2023
Dex-Benchmark: datasets and code to evaluate algorithms for transcriptomics data analysisZhuorui Xie, Clara Chen, Avi Ma'ayanDatabase : the Journal of Biological Databases and Curation|March 31, 2021
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learningEryk Kropiwnicki, John E Evangelista, Daniel J Stein, et al.Nucleic Acids Research|May 23, 2019
ChEA3: transcription factor enrichment analysis by orthogonal omics integrationAlexandra B Keenan, Denis Torre, Alexander Lachmann, et al.Bioinformatics (Oxford, England)|May 7, 2016
Drug-induced adverse events prediction with the LINCS L1000 dataZichen Wang, Neil R Clark, Avi Ma'ayanBMC Bioinformatics|July 4, 2012
Genes2FANs: connecting genes through functional association networksRuth Dannenfelser, Neil R Clark, Avi Ma'ayanPageof 23