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Plos Computational Biology|January 3, 2018
Integration of pan-cancer transcriptomics with RPPA proteomics reveals mechanisms of epithelial-mesenchymal transitionSimon Koplev, Katie Lin, Anders B Dohlman, et al.Biorxiv : the Preprint Server for Biology|June 12, 2025
A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene SetsDaniel J B Clarke, Giacomo B Marino, Avi Ma'ayanScience (New York, N.Y.)|May 20, 2008
Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowthKenneth D Bromberg, Avi Ma'ayan, Susana R Neves, et al.Kidney International|September 2, 2011
Systems biology of kidney diseasesJohn Cijiang He, Peter Y Chuang, Avi Ma'ayan, et al.Cell Research|November 16, 2011
Oct4 links multiple epigenetic pathways to the pluripotency networkJunjun Ding, Huilei Xu, Francesco Faiola, et al.Current Protocols|March 29, 2021
Gene Set Knowledge Discovery with EnrichrZhuorui Xie, Allison Bailey, Maxim V Kuleshov, et al.Science Signaling|May 24, 2018
Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networksMark Grimes, Benjamin Hall, Lauren Foltz, et al.Nature Cell Biology|August 3, 2007
Functional atlas of the integrin adhesomeRonen Zaidel-Bar, Shalev Itzkovitz, Avi Ma'ayan, et al.American Journal of Medical Genetics. Part C, Seminars in Medical Genetics|April 14, 2012
Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disabilityYan Kou, Catalina Betancur, Huilei Xu, et al.Nature Neuroscience|August 16, 2016
Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegenerationMelanie von Schimmelmann, Philip A Feinberg, Josefa M Sullivan, et al.Pageof 23