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BMC Genomics|August 1, 2024
RNA-DNA differences in variant calls from cattle tissues result in erroneous eQTLsAlexander S Leonard, Xena M Mapel, Hubert Pausch
Genome Research|February 14, 2024
Pangenome-genotyped structural variation improves molecular phenotype mapping in cattleAlexander S Leonard, Xena M Mapel, Hubert Pausch
Genome Biology|May 22, 2023
Graph construction method impacts variation representation and analyses in a bovine super-pangenomeAlexander S Leonard, Danang Crysnanto, Xena M Mapel, et al.
Genetics, Selection, Evolution : GSE|May 11, 2023
The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattleAudald Lloret-Villas, Hubert Pausch, Alexander S Leonard
Communications Biology|January 21, 2026
Molecular QTL are enriched for structural variants in a cattle long-read cohortXena Marie Mapel, Alexander S Leonard, Hubert Pausch
BMC Bioinformatics|December 31, 2025
PG-SCUnK: measuring pangenome graph representativeness using single-copy and universal K-mersTristan Cumer, Sotiria Milia, Alexander S Leonard, et al.
Proceedings of the National Academy of Sciences of the United States of America|May 11, 2021
Novel functional sequences uncovered through a bovine multiassembly graphDanang Crysnanto, Alexander S Leonard, Zih-Hua Fang, et al.
Nucleic Acids Research|November 12, 2023
Exploiting public databases of genomic variation to quantify evolutionary constraint on the branch point sequence in 30 plant and animal speciesAdéla Nosková, Chao Li, Xiaolong Wang, et al.
Communications Biology|November 28, 2024
Genome assembly of wisent (Bison bonasus) uncovers a deletion that likely inactivates the THRSP geneChiara Bortoluzzi, Xena Marie Mapel, Stefan Neuenschwander, et al.
Genome Research|December 18, 2024
Taurine pangenome uncovers a segmental duplication upstream of <i>KIT</i> associated with depigmentation in white-headed cattleSotiria Milia, Alexander S Leonard, Xena Marie Mapel, et al.
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