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Bioinformatics Advances|December 1, 2025
pyALRA: python implementation of low-rank zero-preserving approximation of single cell RNA-seqAlexandre Lanau, Joshua J WaterfallCancer Cell|December 18, 2014
Building through breaking: the development of cancer neochromosomesJoshua J Waterfall, Paul S MeltzerCancer Cell|March 24, 2012
Targeting epigenetic misregulation in synovial sarcomaJoshua J Waterfall, Paul S MeltzerCancer Cell|March 14, 2018
A Non-canonical Polycomb Dependency in Synovial SarcomaJoshua J Waterfall, Paul S MeltzerNature Genetics|February 26, 2015
Avalanching mutations in biallelic mismatch repair deficiency syndromeJoshua J Waterfall, Paul S MeltzerCell Reports Methods|May 14, 2024
A computational tool suite to facilitate single-cell lineage tracing analysesJoshua J Waterfall, Adil Midoun, Leïla PeriéScience (New York, N.Y.)|December 6, 2008
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promotersLeighton J Core, Joshua J Waterfall, John T LisBiochemical and Biophysical Research Communications|August 12, 2014
The role of mutation of metabolism-related genes in genomic hypermethylationJoshua J Waterfall, J Keith Killian, Paul S MeltzerBioinformatics (Oxford, England)|May 14, 2026
Yomix: An Interactive Tool for the Exploration of Low-Dimensional Embeddings in Omics DataNicolas Perrin-Gilbert, Nisma Amjad, Pierre Fumeron, et al.Annals of the New York Academy of Sciences|October 11, 2007
Extracting falsifiable predictions from sloppy modelsRyan N Gutenkunst, Fergal P Casey, Joshua J Waterfall, et al.Pageof 6