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International Journal of Molecular Sciences|May 27, 2023
Assessing the Differential Methylation Analysis Quality for Microarray and NGS PlatformsAnna Budkina, Yulia A Medvedeva, Alexey Stupnikov
Chinese Journal of Cancer|August 9, 2015
Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patientsAlexey Stupnikov, Galina V Glazko, Frank Emmert-Streib
International Journal of Molecular Sciences|January 21, 2023
In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq DataAndrey Shevtsov, Mikhail Raevskiy, Alexey Stupnikov, et al.
Briefings in Bioinformatics|December 12, 2023
scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprintingPavel Akhtyamov, Layal Shaheen, Mikhail Raevskiy, et al.
BMC Cancer|December 5, 2019
Comparing biological information contained in mRNA and non-coding RNAs for classification of lung cancer patientsJohannes Smolander, Alexey Stupnikov, Galina Glazko, et al.
Gigascience|December 10, 2024
GPU-accelerated Kendall distance computation for large or sparse dataPavel Akhtyamov, Ausaaf Nabi, Vladislav Gafurov, et al.
Non-Coding RNA|June 1, 2022
ITAS: Integrated Transcript Annotation for Small RNAAlexey Stupnikov, Vitaly Bezuglov, Ivan Skakov, et al.
International Journal of Molecular Sciences|February 25, 2023
Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, BenchmarkingVitalik Bezuglov, Alexey Stupnikov, Ivan Skakov, et al.
F1000Research|October 10, 2022
Hobotnica: exploring molecular signature qualityAlexey Stupnikov, Alexey Sizykh, Anna Budkina, et al.
Bioinformatics (Oxford, England)|July 13, 2016
samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM filesAlexey Stupnikov, Shailesh Tripathi, Ricardo de Matos Simoes, et al.
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