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Quarterly Reviews of Biophysics|July 30, 2013
Protonation and pK changes in protein-ligand bindingAlexey V Onufriev, Emil AlexovFrontiers in Molecular Biosciences|May 5, 2023
Biologically relevant small variations of intra-cellular pH can have significant effect on stability of protein-DNA complexes, including the nucleosomeAlexey V OnufrievProteins|December 10, 2002
Role of the protein side-chain fluctuations on the strength of pair-wise electrostatic interactions: comparing experimental with computed pK(a)sEmil AlexovEuropean Journal of Biochemistry|December 23, 2003
Numerical calculations of the pH of maximal protein stability. The effect of the sequence composition and three-dimensional structureEmil AlexovCurrent Opinion in Structural Biology|February 3, 2019
The nucleosome: from structure to function through physicsAlexey V Onufriev, Helmut SchiesselJournal of Computational Chemistry|July 2, 2009
An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactionsRamu Anandakrishnan, Alexey V OnufrievBiorxiv : the Preprint Server for Biology|September 2, 2020
MMGB/SA Consensus Estimate of the Binding Free Energy Between the Novel Coronavirus Spike Protein to the Human ACE2 ReceptorNegin Forouzesh, Alexey V OnufrievPlos One|November 15, 2019
Exploring optimization strategies for improving explicit water models: Rigid n-point model and polarizable model based on Drude oscillatorYeyue Xiong, Alexey V OnufrievJournal of Theoretical & Computational Chemistry|August 4, 2015
Accuracy of continuum electrostatic calculations based on three common dielectric boundary definitionsAlexey V Onufriev, Boris AguilarPageof 22