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Biorxiv : the Preprint Server for Biology|April 2, 2024
Design of Antigen-Specific Antibody CDRH3 Sequences Using AI and Germline-Based TemplatesToma M Marinov, Alexandra A Abu-Shmais, Alexis K Janke, et al.
Patterns (New York, N.Y.)|February 23, 2026
Contrastive learning enables epitope overlap predictions for targeted antibody discoveryClinton M Holt, Alexis K Janke, Parastoo Amlashi, et al.
Biorxiv : the Preprint Server for Biology|March 10, 2025
Contrastive Learning Enables Epitope Overlap Predictions for Targeted Antibody DiscoveryClinton M Holt, Alexis K Janke, Parastoo Amlashi, et al.
Plos Computational Biology|April 21, 2025
An expandable synthetic library of human paired antibody sequencesToma M Marinov, Perry T Wasdin, Gwen Jordaan, et al.
Journal of Immunology (Baltimore, Md. : 1950)|March 15, 2024
Potent HPIV3-neutralizing IGHV5-51 Antibodies Identified from Multiple Individuals Show L Chain and CDRH3 PromiscuityAlexandra A Abu-Shmais, Rose J Miller, Alexis K Janke, et al.
Biorxiv : the Preprint Server for Biology|November 18, 2024
A potently neutralizing and protective human antibody targeting antigenic site V on RSV and hMPV fusion glycoproteinAlexandra A Abu-Shmais, Luqiang Guo, Ahmed Magady Khalil, et al.
Cell Reports. Medicine|January 17, 2026
A potently neutralizing and protective human antibody targeting antigenic site V on RSV and hMPV fusion glycoproteinAlexandra A Abu-Shmais, Luqiang Guo, Ahmed Magdy Khalil, et al.
Biorxiv : the Preprint Server for Biology|March 3, 2025
Generation of antigen-specific paired chain antibody sequences using large language modelsPerry T Wasdin, Nicole V Johnson, Alexis K Janke, et al.
Cell|November 5, 2025
Generation of antigen-specific paired-chain antibodies using large language modelsPerry T Wasdin, Nicole V Johnson, Alexis K Janke, et al.
Biorxiv : the Preprint Server for Biology|February 3, 2025
Glycan-reactive antibodies isolated from human HIV-1 vaccine trial participants show broad pathogen cross-reactivityParker J Jamieson, Xiaoying Shen, Alexandra A Abu-Shmais, et al.
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