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Nature Methods|November 1, 2011
Automated protein-DNA interaction screening of Drosophila regulatory elementsKorneel Hens, Jean-Daniel Feuz, Alina Isakova, et al.Nature Methods|January 17, 2017
SMiLE-seq identifies binding motifs of single and dimeric transcription factorsAlina Isakova, Romain Groux, Michael Imbeault, et al.Research Square|September 18, 2025
Scalable single-cell total RNA-seq reveals non-coding programs in immunity, infection, and brain developmentAlina Isakova, Stephen Quake, Daniel Liu, et al.Molecular Systems Biology|August 7, 2013
A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networksCarine Gubelmann, Sebastian M Waszak, Alina Isakova, et al.Plos Biology|August 23, 2012
Topology and dynamics of the zebrafish segmentation clock core circuitChristian Schröter, Saúl Ares, Luis G Morelli, et al.Nature Biotechnology|April 1, 2026
Scalable single-cell total RNA sequencing unifies coding and noncoding transcriptomicsAlina Isakova, Daniel Dan Liu, Ivana Cvijović, et al.Proceedings of the National Academy of Sciences of the United States of America|February 1, 2017
Systematic dissection of genomic features determining transcription factor binding and enhancer functionSharon R Grossman, Xiaolan Zhang, Li Wang, et al.Biorxiv : the Preprint Server for Biology|February 23, 2026
Cellular Aging Signatures in the Plasma Proteome Record Human Health and DiseaseDaisy Yi Ding, Veronica Augustina Bot, Kenneth L Chen, et al.Biomedical Optics Express|April 13, 2026
Assessment of the angiogenic potential of xenografted tumors by biomedical imaging techniquesIrina Druzhkova, Anna Orlova, Pavel Subochev, et al.Nature Medicine|June 15, 2026
Plasma proteomic signatures of cellular aging predict human diseaseDaisy Yi Ding, Veronica Augustina Bot, Kenneth L Chen, et al.Pageof 3