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Bioinformatics (Oxford, England)|May 13, 2022
OMAMO: orthology-based alternative model organism selectionAlina Nicheperovich, Adrian M Altenhoff, Christophe Dessimoz, et al.Journal of Molecular Evolution|September 26, 2025
OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology DataAli Yazdizadeh Kharrazi, Adrian M Altenhoff, Nikolai Romashchenko, et al.Plos Computational Biology|January 17, 2009
Phylogenetic and functional assessment of orthologs inference projects and methodsAdrian M Altenhoff, Christophe DessimozNucleic Acids Research|November 14, 2023
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA EcosystemAdrian M Altenhoff, Alex Warwick Vesztrocy, Charles Bernard, et al.Methods in Molecular Biology (Clifton, N.J.)|March 13, 2012
Inferring orthology and paralogyAdrian M Altenhoff, Christophe DessimozMethods in Molecular Biology (Clifton, N.J.)|July 7, 2019
Inferring Orthology and ParalogyAdrian M Altenhoff, Natasha M Glover, Christophe DessimozNature Methods|January 3, 2025
Orthology inference at scale with FastOMASina Majidian, Yannis Nevers, Ali Yazdizadeh Kharrazi, et al.Peerj|October 17, 2014
Speeding up all-against-all protein comparisons while maintaining sensitivity by considering subsequence-level homologyLucas D Wittwer, Ivana Piližota, Adrian M Altenhoff, et al.Plos One|January 24, 2013
Inferring hierarchical orthologous groups from orthologous gene pairsAdrian M Altenhoff, Manuel Gil, Gaston H Gonnet, et al.Nucleic Acids Research|November 30, 2010
OMA 2011: orthology inference among 1000 complete genomesAdrian M Altenhoff, Adrian Schneider, Gaston H Gonnet, et al.Pageof 14