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Viruses|January 17, 2013
Base composition and translational selection are insufficient to explain codon usage bias in plant virusesDaniel J Cardinale, Kate DeRosa, Siobain DuffyPlos One|November 11, 2014
Bioinformatic analysis reveals genome size reduction and the emergence of tyrosine phosphorylation site in the movement protein of New World bipartite begomovirusesEric S Ho, Joan Kuchie, Siobain DuffyJournal of Virology|May 27, 2026
Narrowed host ranges do not constrain future host range expansion in RNA phage Φ6Taylor P Andrews, Abbey Isaac, Siobain DuffyCurrent Opinion in Virology|September 23, 2018
Whitefly-transmitted viruses threatening cassava production in AfricaAlana Lynn Jacobson, Siobain Duffy, Peter SseruwagiEcology Letters|February 9, 2017
Overlooking the smallest matter: viruses impact biological invasionsCara A Faillace, Nicholas S Lorusso, Siobain DuffyMethods in Molecular Biology (Clifton, N.J.)|March 11, 2025
Recombination Analysis of Geminiviruses Using Recombination Detection Program (RDP)Alvin Crespo-Bellido, Darren Patrick Martin, Siobain DuffyNature Reviews. Genetics|March 6, 2008
Rates of evolutionary change in viruses: patterns and determinantsSiobain Duffy, Laura A Shackelton, Edward C HolmesAdvances in Virus Research|January 13, 2019
Eukaryotic Circular Rep-Encoding Single-Stranded DNA (CRESS DNA) Viruses: Ubiquitous Viruses With Small Genomes and a Diverse Host RangeLele Zhao, Karyna Rosario, Mya Breitbart, et al.BMC Bioinformatics|February 2, 2013
A multispecies polyadenylation site modelEric S Ho, Samuel I Gunderson, Siobain DuffyApplied and Environmental Microbiology|March 28, 2002
Modeling yeast spoilage in cold-filled ready-to-drink beverages with Saccharomyces cerevisiae, Zygosaccharomyces bailii, and Candida lipolyticaAlyce Stiles Battey, Siobain Duffy, Donald W SchaffnerPageof 8