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Genome Biology and Evolution|July 14, 2010
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genesJames J Cai, Dmitri A PetrovMolecular Phylogenetics and Evolution|April 28, 2018
Comparative transcriptomics and genomic patterns of discordance in Capsiceae (Solanaceae)Daniel Spalink, Kevin Stoffel, Genevieve K Walden, et al.BMC Genomics|July 20, 2023
Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosaMatthew Huff, Amanda M Hulse-Kemp, Brian E Scheffler, et al.Nature Communications|December 22, 2022
Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melonJustin N Vaughn, Sandra E Branham, Brian Abernathy, et al.Biorxiv : the Preprint Server for Biology|December 31, 2025
Mapping Gene Impact on Single-cell Transcriptomic Networks via Perturbation Response ScanningShreyan Gupta, Selim Romero, James J CaiPlants (Basel, Switzerland)|June 10, 2022
Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding ProgramsGrant T Billings, Michael A Jones, Sachin Rustgi, et al.The Plant Genome|July 27, 2025
Trait mapping differentiates loci influencing spike and flag leaf glaucousness in wheatDaniela Miller, Luis Rivera-Burgos, Mohammed Guedira, et al.Scientific Reports|April 23, 2020
Transcriptional analyses of differential cultivars during resistant and susceptible interactions with Peronospora effusa, the causal agent of spinach downy mildewShyam L Kandel, Amanda M Hulse-Kemp, Kevin Stoffel, et al.Genome Biology and Evolution|October 13, 2010
Broker genes in human diseaseJames J Cai, Elhanan Borenstein, Dmitri A PetrovJournal of Cellular Immunology|June 26, 2026
A Commentary on Dual Orphan Nuclear Receptor 4A1 (NR4A1) and NR4A2 LigandsStephen Safe, James J Cai, Robert S ChapkinPageof 16