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BMC Bioinformatics|May 1, 2015
Secondary structural entropy in RNA switch (Riboswitch) identificationAmirhossein Manzourolajdad, Jonathan ArnoldNon-Coding RNA|March 24, 2025
Secondary-Structure-Informed RNA Inverse Design via Relational Graph Neural NetworksAmirhossein Manzourolajdad, Mohammad MohebbiPlos One|June 13, 2019
Structural prediction of RNA switches using conditional base-pair probabilitiesAmirhossein Manzourolajdad, John L SpougePlos One|September 30, 2016
Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American EpidemicAmirhossein Manzourolajdad, Mileidy Gonzalez, John L SpougeInternational Journal of Molecular Sciences|October 14, 2022
Variant-Specific Analysis Reveals a Novel Long-Range RNA-RNA Interaction in SARS-CoV-2 Orf1aMatthew Dukeshire, David Schaeper, Pravina Venkatesan, et al.Non-Coding RNA|March 24, 2025
A Multi-Input Neural Network Model for Accurate MicroRNA Target Site DetectionMohammad Mohebbi, Amirhossein Manzourolajdad, Ethan Bennett, et al.Journal of Theoretical Biology|November 20, 2012
Information-theoretic uncertainty of SCFG-modeled folding space of the non-coding RNAAmirhossein Manzourolajdad, Yingfeng Wang, Timothy I Shaw, et al.Plos One|September 1, 2022
A Putative long-range RNA-RNA interaction between ORF8 and Spike of SARS-CoV-2Okiemute Beatrice Omoru, Filipe Pereira, Sarath Chandra Janga, et al.Briefings in Functional Genomics|February 8, 2023
Experimental and computational methods for studying the dynamics of RNA-RNA interactions in SARS-COV2 genomesMansi Srivastava, Matthew R Dukeshire, Quoseena Mir, et al.Genome Research|October 20, 2021
Cellular abundance shapes function in piRNA-guided genome defensePavol Genzor, Parthena Konstantinidou, Daniel Stoyko, et al.Pageof 10