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Methods in Enzymology|November 4, 2023
Enzymatic synthesis of RNA standards for mapping and quantifying RNA modifications in sequencing analysisHoward Gamper, Caroline McCormick, Amr Makhamreh, et al.
RNA (New York, N.Y.)|July 9, 2025
Pseudouridine reprogramming in the human T-cell epitranscriptome: from primary to immortalized statesOleksandra Fanari, Dylan Bloch, Yuchen Qiu, et al.
Nanoscale|April 20, 2022
Discrimination of RNA fiber structures using solid-state nanoporesPrabhat Tripathi, Morgan Chandler, Christopher Michael Maffeo, et al.
Nature Biotechnology|January 9, 2023
Unidirectional single-file transport of full-length proteins through a nanoporeLuning Yu, Xinqi Kang, Fanjun Li, et al.
Nature Communications|January 19, 2023
Semi-quantitative detection of pseudouridine modifications and type I/II hypermodifications in human mRNAs using direct long-read sequencingSepideh Tavakoli, Mohammad Nabizadeh, Amr Makhamreh, et al.
Scientific Reports|September 28, 2024
Nanopore signal deviations from pseudouridine modifications in RNA are sequence-specific: quantification requires dedicated synthetic controlsAmr Makhamreh, Sepideh Tavakoli, Ali Fallahi, et al.
Research Square|June 29, 2026
High-Rate Fingerprinting of Protein Isoforms by Quasi-regulated Enzyme-free Transport Through CytK NanoporesMeni Wanunu, Amr Makhamreh, Ali Fallahi, et al.
Cell Systems|March 21, 2025
Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess epitranscriptome plasticity in a neuronal cell lineOleksandra Fanari, Sepideh Tavakoli, Yuchen Qiu, et al.
Biorxiv : the Preprint Server for Biology|April 8, 2024
Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticityOleksandra Fanari, Sepideh Tavakoli, Yuchen Qiu, et al.
Cell Reports|June 23, 2021
Transcriptional repression by FEZF2 restricts alternative identities of cortical projection neuronsJeremiah Tsyporin, David Tastad, Xiaokuang Ma, et al.
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