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Genetics|July 9, 2004
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilisJody Hey, Rasmus NielsenPlos Genetics|June 12, 2013
Inferring demographic history from a spectrum of shared haplotype lengthsKelley Harris, Rasmus NielsenMolecular Biology and Evolution|May 29, 2002
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineagesZiheng Yang, Rasmus NielsenMolecular Biology and Evolution|June 5, 2003
Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNARasmus Nielsen, Ziheng YangMolecular Ecology|January 4, 2012
Estimating population divergence time and phylogeny from single-nucleotide polymorphisms data with outgroup ascertainment biasYong Wang, Rasmus NielsenMolecular Biology and Evolution|January 8, 2008
Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usageZiheng Yang, Rasmus NielsenGenome Research|August 1, 2014
Error-prone polymerase activity causes multinucleotide mutations in humansKelley Harris, Rasmus NielsenBioinformatics (Oxford, England)|October 20, 2021
AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic treesLenore Pipes, Rasmus NielsenMolecular Biology and Evolution|March 23, 2026
WASTER: Practical de novo phylogenomics from low-coverage short readsChao Zhang, Rasmus NielsenBiorxiv : the Preprint Server for Biology|February 3, 2025
WASTER: Practical de novo phylogenomics from low-coverage short readsChao Zhang, Rasmus NielsenPageof 36