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BMJ Open|July 2, 2018
History and publication trends in the diffusion and early uptake of indirect comparison meta-analytic methods to study drugs: animated coauthorship networks over timeJoann K Ban, Mina Tadrous, Amy X Lu, et al.Plos Computational Biology|June 29, 2022
Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learningAlex X Lu, Amy X Lu, Iva Pritišanac, et al.Patterns (New York, N.Y.)|June 27, 2025
Tokenized and continuous embedding compressions of protein sequence and structureAmy X Lu, Wilson Yan, Kevin K Yang, et al.Biorxiv : the Preprint Server for Biology|March 13, 2023
Strategies for effectively modelling promoter-driven gene expression using transfer learningAniketh Janardhan Reddy, Michael H Herschl, Xinyang Geng, et al.Current Protocols|May 7, 2021
Learned Embeddings from Deep Learning to Visualize and Predict Protein SetsChristian Dallago, Konstantin Schütze, Michael Heinzinger, et al.Nature|March 4, 2026
Genome modelling and design across all domains of life with Evo 2Garyk Brixi, Matthew G Durrant, Jerome Ku, et al.Pageof 1