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Proteomics|August 12, 2011
Can the false-discovery rate be misleading?Rodrigo Barboza, Daniel Cociorva, Tao Xu, et al.Journal of Proteomics|February 2, 2015
SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysisDiogo B Lima, Tatiani B de Lima, Tiago S Balbuena, et al.Proteomics|February 8, 2012
Search engine processor: Filtering and organizing peptide spectrum matchesPaulo C Carvalho, Juliana S G Fischer, Tao Xu, et al.Journal of Proteomics|January 20, 2010
Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcoholJuliana de Saldanha da Gama Fischer, Lujian Liao, Paulo C Carvalho, et al.Nature Protocols|December 15, 2015
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0Paulo C Carvalho, Diogo B Lima, Felipe V Leprevost, et al.Bioinformatics (Oxford, England)|February 5, 2019
Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectraDiogo B Lima, André R F Silva, Mathieu Dupré, et al.Journal of Proteomics|June 5, 2021
Leveraging the partition selection bias to achieve a high-quality clustering of mass spectraAndré R F Silva, Diogo B Lima, Louise U Kurt, et al.BMC Cancer|April 20, 2019
Differential proteomic comparison of breast cancer secretome using a quantitative paired analysis workflowGiselle Villa Flor Brunoro, Paulo Costa Carvalho, Valmir C Barbosa, et al.Bioinformatics (Oxford, England)|March 1, 2013
Effectively addressing complex proteomic search spaces with peptide spectrum matchingDiogo Borges, Yasset Perez-Riverol, Fabio C S Nogueira, et al.Scientific Data|July 12, 2017
A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venomDilza Trevisan-Silva, Aline V Bednaski, Juliana S G Fischer, et al.Pageof 6